CESET is governed and controlled by an Executive Council comprising of the lifelong members of the trust and founders of the Centre. The Executive Council is supported by a Governing Advisory Council (GAC), which is responsible to govern all academic and otherwise affairs of the Centre. GAC is a powerful body with its chairman and nine other members representing the faculty, management, Higher Education Commission (HEC), affiliating university, public figures, eminent academicians, scientists and engineers and businessmen of the country.
CESET is managed by two independent positions. Vice President (Academic Management & Outreach) is responsible to all matters pertaining to the academic activity and international partnerships of the Centre, whereas Vice President (Administration & Projects) is looking after the day to day administrative running of the Centre. He also acts as focal point to all external projects being executed in the Centre. Director Academics & Quality Assurance is responsible for all matters pertaining to the office of the registry with an additional portfolio of assuring the implementation of quality protocols for teaching and research programs.
Academic bodies such as Academic Council, Board of Synergy and Board of Studies are also important constituents of the CESET academic organization.